J3_9PRD_014

3D structure

PDB id

9PRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the P state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PRD_014 not in the Motif Atlas

Homologous match to J3_6CZR_019

Geometric discrepancy: 0.1628

The information below is about J3_6CZR_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PRD|1|AA|A|1198
9PRD|1|AA|G|1199
9PRD|1|AA|G|1200
9PRD|1|AA|A|1201
*
9PRD|1|AA|U|1364
9PRD|1|AA|A|1365
9PRD|1|AA|C|1366
*
9PRD|1|AA|G|1421
9PRD|1|AA|G|1422
9PRD|1|AA|A|1423
9PRD|1|AA|U|1424

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AG

28S ribosomal protein S9, mitochondrial

Chain Ax

P/P-tRNA