J3_9PS0_006

3D structure

PDB id

9PS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UAAGCCUG*CAACC*GCA

Length

16 nucleotides

Bulged bases

9PS0|1|A|A|2425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PS0|1|A|U|2336
9PS0|1|A|A|2337
9PS0|1|A|A|2338
9PS0|1|A|G|2339
9PS0|1|A|C|2340
9PS0|1|A|C|2341
9PS0|1|A|U|2342
9PS0|1|A|G|2343
*
9PS0|1|A|C|2423
9PS0|1|A|A|2424
9PS0|1|A|A|2425
9PS0|1|A|C|2426
9PS0|1|A|C|2427
*
9PS0|1|A|G|2436
9PS0|1|A|C|2437
9PS0|1|A|A|2438

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain 9

39S ribosomal protein L41, mitochondrial

Chain U

39S ribosomal protein L23, mitochondrial

Chain s

39S ribosomal protein S30, mitochondrial