J3_9PS0_017

3D structure

PDB id

9PS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CAUUU*AAACUAC*GGUG

Length

16 nucleotides

Bulged bases

9PS0|1|AA|U|1369, 9PS0|1|AA|C|1385, 9PS0|1|AA|U|1386

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PS0|1|AA|C|1366
9PS0|1|AA|A|1367
9PS0|1|AA|U|1368
9PS0|1|AA|U|1369
9PS0|1|AA|U|1370
*
9PS0|1|AA|A|1382
9PS0|1|AA|A|1383
9PS0|1|AA|A|1384
9PS0|1|AA|C|1385
9PS0|1|AA|U|1386
9PS0|1|AA|A|1387
9PS0|1|AA|C|1388
*
9PS0|1|AA|G|1418
9PS0|1|AA|G|1419
9PS0|1|AA|U|1420
9PS0|1|AA|G|1421

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AX

28S ribosomal protein S29, mitochondrial

Chain e

39S ribosomal protein L46, mitochondrial

Chain f

39S ribosomal protein L48, mitochondrial