J3_9PS7_015

3D structure

PDB id

9PS7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/T-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

9PS7|1|AA|U|1229, 9PS7|1|AA|C|1230, 9PS7|1|AA|A|1231, 9PS7|1|AA|A|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PS7|1|AA|U|1210
9PS7|1|AA|G|1211
9PS7|1|AA|U|1212
9PS7|1|AA|A|1213
9PS7|1|AA|A|1214
9PS7|1|AA|U|1215
9PS7|1|AA|C|1216
*
9PS7|1|AA|G|1227
9PS7|1|AA|A|1228
9PS7|1|AA|U|1229
9PS7|1|AA|C|1230
9PS7|1|AA|A|1231
9PS7|1|AA|A|1232
9PS7|1|AA|C|1233
9PS7|1|AA|C|1234
9PS7|1|AA|U|1235
9PS7|1|AA|C|1236
9PS7|1|AA|A|1237
9PS7|1|AA|C|1238
*
9PS7|1|AA|G|1351
9PS7|1|AA|C|1352
9PS7|1|AA|A|1353
9PS7|1|AA|A|1354

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain 8

39S ribosomal protein L40, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial