J3_9PSI_011

3D structure

PDB id

9PSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GAUU*AUUAACCU*AGC

Length

15 nucleotides

Bulged bases

9PSI|1|AA|A|688, 9PSI|1|AA|C|828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PSI|1|AA|G|687
9PSI|1|AA|A|688
9PSI|1|AA|U|689
9PSI|1|AA|U|690
*
9PSI|1|AA|A|823
9PSI|1|AA|U|824
9PSI|1|AA|U|825
9PSI|1|AA|A|826
9PSI|1|AA|A|827
9PSI|1|AA|C|828
9PSI|1|AA|C|829
9PSI|1|AA|U|830
*
9PSI|1|AA|A|856
9PSI|1|AA|G|857
9PSI|1|AA|C|858

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial