J3_9PSI_014
3D structure
- PDB id
- 9PSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the A-P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.12 Å
Loop
- Sequence
- AGGA*UAC*GGAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PSI_014 not in the Motif Atlas
- Homologous match to J3_6CZR_019
- Geometric discrepancy: 0.1608
- The information below is about J3_6CZR_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PSI|1|AA|A|1198
9PSI|1|AA|G|1199
9PSI|1|AA|G|1200
9PSI|1|AA|A|1201
*
9PSI|1|AA|U|1364
9PSI|1|AA|A|1365
9PSI|1|AA|C|1366
*
9PSI|1|AA|G|1421
9PSI|1|AA|G|1422
9PSI|1|AA|A|1423
9PSI|1|AA|U|1424
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AF
- 28S ribosomal protein S7, mitochondrial
- Chain AG
- 28S ribosomal protein S9, mitochondrial
- Chain Ax
- P/P-tRNA
- Chain Ay
- Transfer RNA; tRNA
Coloring options: