J3_9PSM_015

3D structure

PDB id

9PSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

9PSM|1|AA|U|1229, 9PSM|1|AA|C|1230, 9PSM|1|AA|A|1231, 9PSM|1|AA|A|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PSM|1|AA|U|1210
9PSM|1|AA|G|1211
9PSM|1|AA|U|1212
9PSM|1|AA|A|1213
9PSM|1|AA|A|1214
9PSM|1|AA|U|1215
9PSM|1|AA|C|1216
*
9PSM|1|AA|G|1227
9PSM|1|AA|A|1228
9PSM|1|AA|U|1229
9PSM|1|AA|C|1230
9PSM|1|AA|A|1231
9PSM|1|AA|A|1232
9PSM|1|AA|C|1233
9PSM|1|AA|C|1234
9PSM|1|AA|U|1235
9PSM|1|AA|C|1236
9PSM|1|AA|A|1237
9PSM|1|AA|C|1238
*
9PSM|1|AA|G|1351
9PSM|1|AA|C|1352
9PSM|1|AA|A|1353
9PSM|1|AA|A|1354

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AH

28S ribosomal protein S10, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial

Chain Aw

A/P-tRNA