J3_9PSM_017

3D structure

PDB id

9PSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ structure of the human mitoribosome in the A/P-P/E state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CAUUU*AAACUAC*GGUG

Length

16 nucleotides

Bulged bases

9PSM|1|AA|U|1369, 9PSM|1|AA|C|1385, 9PSM|1|AA|U|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PSM|1|AA|C|1366
9PSM|1|AA|A|1367
9PSM|1|AA|U|1368
9PSM|1|AA|U|1369
9PSM|1|AA|U|1370
*
9PSM|1|AA|A|1382
9PSM|1|AA|A|1383
9PSM|1|AA|A|1384
9PSM|1|AA|C|1385
9PSM|1|AA|U|1386
9PSM|1|AA|A|1387
9PSM|1|AA|C|1388
*
9PSM|1|AA|G|1418
9PSM|1|AA|G|1419
9PSM|1|AA|U|1420
9PSM|1|AA|G|1421

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AX

28S ribosomal protein S29, mitochondrial

Chain Ax

Transfer RNA; tRNA