J3_9PZG_009
3D structure
- PDB id
- 9PZG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9PZG|1|A|A|975, 9PZG|1|A|G|976, 9PZG|1|A|A|978
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PZG_009 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.3594
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9PZG|1|A|U|955
9PZG|1|A|U|956
9PZG|1|A|U|957
9PZG|1|A|A|958
9PZG|1|A|A|959
9PZG|1|A|U|960
9PZG|1|A|U|961
9PZG|1|A|C|962
*
9PZG|1|A|G|973
9PZG|1|A|A|974
9PZG|1|A|A|975
9PZG|1|A|G|976
9PZG|1|A|A|977
9PZG|1|A|A|978
9PZG|1|A|C|979
9PZG|1|A|C|980
9PZG|1|A|U|981
9PZG|1|A|U|982
9PZG|1|A|A|983
9PZG|1|A|C|984
*
9PZG|1|A|G|1221
9PZG|1|A|G|1222
9PZG|1|A|C|1223
9PZG|1|A|U|1224
9PZG|1|A|A|1225
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS9
- Chain N
- Small ribosomal subunit protein uS14
- Chain S
- Small ribosomal subunit protein uS19
Coloring options: