J3_9PZG_014

3D structure

PDB id

9PZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial ribosomal 2'-O-methyltransferase RsmI in complex with the small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

9PZG|1|A|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PZG_014 not in the Motif Atlas

Geometric match to J3_8CRE_083

Geometric discrepancy: 0.3733

The information below is about J3_8CRE_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9PZG|1|A|U|1073
9PZG|1|A|G|1074
*
9PZG|1|A|U|1083
9PZG|1|A|G|1084
9PZG|1|A|U|1085
9PZG|1|A|U|1086
9PZG|1|A|G|1087
*
9PZG|1|A|C|1098
9PZG|1|A|G|1099
9PZG|1|A|C|1100
9PZG|1|A|A|1101
9PZG|1|A|A|1102

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain E

Small ribosomal subunit protein uS5