J3_9Q1Q_005

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

9Q1Q|1|5|C|704, 9Q1Q|1|5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|5|C|451
9Q1Q|1|5|A|452
9Q1Q|1|5|G|453
9Q1Q|1|5|U|454
9Q1Q|1|5|C|455
*
9Q1Q|1|5|G|701
9Q1Q|1|5|U|702
9Q1Q|1|5|G|703
9Q1Q|1|5|C|704
9Q1Q|1|5|G|705
*
9Q1Q|1|5|C|1292
9Q1Q|1|5|G|1293
9Q1Q|1|5|A|1294
9Q1Q|1|5|C|1295
9Q1Q|1|5|G|1296

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein eL6

Chain e

eL32

Chain f

Large ribosomal subunit protein eL33

Chain r

60S ribosomal protein L28