J3_9Q1Q_009
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 9Q1Q|1|5|A|1805, 9Q1Q|1|5|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|5|U|1726
9Q1Q|1|5|U|1727
*
9Q1Q|1|5|A|1802
9Q1Q|1|5|G|1803
9Q1Q|1|5|A|1804
9Q1Q|1|5|A|1805
9Q1Q|1|5|G|1806
*
9Q1Q|1|5|C|1832
9Q1Q|1|5|G|1833
9Q1Q|1|5|U|1834
9Q1Q|1|5|G|1835
9Q1Q|1|5|G|1836
9Q1Q|1|5|A|1837
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L7
- Chain T
- 60S ribosomal protein L21
- Chain b
- eL29
Coloring options: