J3_9Q1Q_022

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9Q1Q|1|5|A|4464, 9Q1Q|1|5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|5|U|4463
9Q1Q|1|5|A|4464
9Q1Q|1|5|U|4465
9Q1Q|1|5|C|4466
*
9Q1Q|1|5|G|4491
9Q1Q|1|5|U|4492
9Q1Q|1|5|U|4493
*
9Q1Q|1|5|A|4507
9Q1Q|1|5|C|4508
9Q1Q|1|5|U|4509
9Q1Q|1|5|A|4510
9Q1Q|1|5|A|4511
9Q1Q|1|5|U|4512
9Q1Q|1|5|A|4513

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13

Chain V

Large ribosomal subunit protein uL14