J3_9Q1Q_029
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGG*UAAGA*UA
- Length
- 10 nucleotides
- Bulged bases
- 9Q1Q|1|9|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1Q_029 not in the Motif Atlas
- Geometric match to J3_9H3G_030
- Geometric discrepancy: 0.172
- The information below is about J3_9H3G_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9Q1Q|1|9|U|682
9Q1Q|1|9|G|683
9Q1Q|1|9|G|684
*
9Q1Q|1|9|U|918
9Q1Q|1|9|A|919
9Q1Q|1|9|A|920
9Q1Q|1|9|G|921
9Q1Q|1|9|A|922
*
9Q1Q|1|9|U|1022
9Q1Q|1|9|A|1023
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain HH
- Small ribosomal subunit protein eS7
- Chain LL
- Small ribosomal subunit protein uS17
- Chain NN
- 40S ribosomal protein S13
- Chain WW
- 40S ribosomal protein S15a
- Chain XX
- 40S ribosomal protein S23
- Chain bb
- 40S ribosomal protein S27
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