J3_9Q1Q_031

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|9|A|816
9Q1Q|1|9|G|817
9Q1Q|1|9|A|818
9Q1Q|1|9|G|819
*
9Q1Q|1|9|C|829
9Q1Q|1|9|A|830
9Q1Q|1|9|G|831
*
9Q1Q|1|9|C|843
9Q1Q|1|9|U|844
9Q1Q|1|9|G|845
9Q1Q|1|9|G|846
9Q1Q|1|9|A|847
9Q1Q|1|9|U|848

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain EE

40S ribosomal protein S4

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24