J3_9Q1Q_035
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1Q_035 not in the Motif Atlas
- Homologous match to J3_9H3G_036
- Geometric discrepancy: 0.1482
- The information below is about J3_9H3G_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9Q1Q|1|9|U|1225
9Q1Q|1|9|G|1226
9Q1Q|1|9|G|1227
9Q1Q|1|9|A|1228
*
9Q1Q|1|9|U|1530
9Q1Q|1|9|A|1531
9Q1Q|1|9|C|1532
*
9Q1Q|1|9|G|1638
9Q1Q|1|9|G|1639
9Q1Q|1|9|A|1640
9Q1Q|1|9|A|1641
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain FF
- Small ribosomal subunit protein uS7
- Chain QQ
- Small ribosomal subunit protein uS9
- Chain SS
- 40S ribosomal protein S18
- Chain TT
- Small ribosomal subunit protein eS19
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