J3_9Q1Q_036
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9Q1Q|1|9|G|1256, 9Q1Q|1|9|A|1258, 9Q1Q|1|9|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1Q_036 not in the Motif Atlas
- Homologous match to J3_9PN5_037
- Geometric discrepancy: 0.1044
- The information below is about J3_9PN5_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9Q1Q|1|9|C|1237
9Q1Q|1|9|U|1238
9Q1Q|1|9|U|1239
9Q1Q|1|9|A|1240
9Q1Q|1|9|A|1241
9Q1Q|1|9|U|1242
9Q1Q|1|9|U|1243
9Q1Q|1|9|U|1244
*
9Q1Q|1|9|G|1255
9Q1Q|1|9|G|1256
9Q1Q|1|9|G|1257
9Q1Q|1|9|A|1258
9Q1Q|1|9|A|1259
9Q1Q|1|9|A|1260
9Q1Q|1|9|C|1261
9Q1Q|1|9|C|1262
9Q1Q|1|9|U|1263
9Q1Q|1|9|C|1264
9Q1Q|1|9|A|1265
9Q1Q|1|9|C|1266
*
9Q1Q|1|9|G|1516
9Q1Q|1|9|G|1517
9Q1Q|1|9|C|1518
9Q1Q|1|9|U|1519
9Q1Q|1|9|G|1520
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain 1
- NediV IRES
- Chain PP
- Small ribosomal subunit protein uS19
- Chain SS
- 40S ribosomal protein S18
- Chain UU
- 40S ribosomal protein S20
- Chain dd
- 40S ribosomal protein S29
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