J3_9Q1Q_040
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 9Q1Q|1|9|A|1454, 9Q1Q|1|9|U|1477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|9|C|1391
9Q1Q|1|9|U|1392
9Q1Q|1|9|G|1393
9Q1Q|1|9|G|1394
9Q1Q|1|9|C|1395
*
9Q1Q|1|9|G|1450
9Q1Q|1|9|G|1451
9Q1Q|1|9|A|1452
9Q1Q|1|9|C|1453
9Q1Q|1|9|A|1454
9Q1Q|1|9|A|1455
9Q1Q|1|9|G|1456
*
9Q1Q|1|9|C|1470
9Q1Q|1|9|C|1471
9Q1Q|1|9|C|1472
9Q1Q|1|9|G|1473
9Q1Q|1|9|A|1474
9Q1Q|1|9|G|1475
9Q1Q|1|9|A|1476
9Q1Q|1|9|U|1477
9Q1Q|1|9|U|1478
9Q1Q|1|9|G|1479
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain DD
- Small ribosomal subunit protein uS3
- Chain FF
- Small ribosomal subunit protein uS7
- Chain QQ
- Small ribosomal subunit protein uS9
- Chain RR
- 40S ribosomal protein S17
- Chain UU
- 40S ribosomal protein S20
- Chain cc
- 40S ribosomal protein S28
- Chain dd
- 40S ribosomal protein S29
- Chain gg
- Receptor of activated protein C kinase 1
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