J3_9Q1S_006
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCC*GCCGG*CCACGCGUCCCCCGCG
- Length
- 24 nucleotides
- Bulged bases
- 9Q1S|1|5|C|1237, 9Q1S|1|5|C|1249, 9Q1S|1|5|G|1271, 9Q1S|1|5|C|1272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|5|U|982
9Q1S|1|5|C|983
9Q1S|1|5|C|984
*
9Q1S|1|5|G|1070
9Q1S|1|5|C|1071
9Q1S|1|5|C|1072
9Q1S|1|5|G|1073
9Q1S|1|5|G|1074
*
9Q1S|1|5|C|1236
9Q1S|1|5|C|1237
9Q1S|1|5|A|1238
9Q1S|1|5|C|1239
9Q1S|1|5|G|1244
9Q1S|1|5|C|1245
9Q1S|1|5|G|1246
9Q1S|1|5|U|1247
9Q1S|1|5|C|1248
9Q1S|1|5|C|1249
9Q1S|1|5|C|1250
9Q1S|1|5|C|1251
9Q1S|1|5|C|1252
9Q1S|1|5|G|1271
9Q1S|1|5|C|1272
9Q1S|1|5|G|1273
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- Large ribosomal subunit protein eL6
- Chain F
- 60S ribosomal protein L7
- Chain b
- Large ribosomal subunit protein eL29
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