J3_9Q1S_008

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAG*CGUAG*UCCGAC

Length

15 nucleotides

Bulged bases

9Q1S|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|5|G|1545
9Q1S|1|5|C|1546
9Q1S|1|5|A|1547
9Q1S|1|5|G|1548
*
9Q1S|1|5|C|1580
9Q1S|1|5|G|1581
9Q1S|1|5|U|1582
9Q1S|1|5|A|1583
9Q1S|1|5|G|1584
*
9Q1S|1|5|U|1609
9Q1S|1|5|C|1610
9Q1S|1|5|C|1611
9Q1S|1|5|G|1612
9Q1S|1|5|A|1613
9Q1S|1|5|C|1614

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain R

60S ribosomal protein L19

Chain g

60S ribosomal protein L34

Chain p

60S ribosomal protein L37a