J3_9Q1S_013
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1S_013 not in the Motif Atlas
- Homologous match to J3_8GLP_030
- Geometric discrepancy: 0.1362
- The information below is about J3_8GLP_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.4
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9Q1S|1|5|U|2440
9Q1S|1|5|C|2441
9Q1S|1|5|G|2442
9Q1S|1|5|G|2443
9Q1S|1|5|U|2444
9Q1S|1|5|C|2445
*
9Q1S|1|5|G|2515
9Q1S|1|5|G|2516
9Q1S|1|5|A|2517
9Q1S|1|5|G|2518
9Q1S|1|5|U|2519
*
9Q1S|1|5|A|2536
9Q1S|1|5|A|2537
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- Large ribosomal subunit protein uL23
- Chain g
- 60S ribosomal protein L34
- Chain k
- Large ribosomal subunit protein eL38
- Chain l
- 60S ribosomal protein L39
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