J3_9Q1S_016

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|5|C|3937
9Q1S|1|5|G|3938
9Q1S|1|5|G|3939
*
9Q1S|1|5|C|4074
9Q1S|1|5|U|4075
9Q1S|1|5|G|4076
9Q1S|1|5|A|4077
9Q1S|1|5|C|4078
*
9Q1S|1|5|G|4168
9Q1S|1|5|G|4169
9Q1S|1|5|A|4170
9Q1S|1|5|C|4171
9Q1S|1|5|A|4172
9Q1S|1|5|G|4173

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain G

Large ribosomal subunit protein eL8

Chain N

60S ribosomal protein L15