J3_9Q1S_018
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9Q1S|1|5|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|5|G|4228
9Q1S|1|5|U|4229
9Q1S|1|5|C|4230
*
9Q1S|1|5|G|4331
9Q1S|1|5|C|4332
9Q1S|1|5|C|4333
9Q1S|1|5|U|4334
9Q1S|1|5|C|4335
9Q1S|1|5|A|4336
9Q1S|1|5|C|4337
9Q1S|1|5|G|4338
9Q1S|1|5|A|4339
9Q1S|1|5|U|4340
9Q1S|1|5|C|4341
9Q1S|1|5|C|4342
*
9Q1S|1|5|G|4370
9Q1S|1|5|G|4371
9Q1S|1|5|U|4372
9Q1S|1|5|G|4373
9Q1S|1|5|U|4374
9Q1S|1|5|C|4375
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain Q
- Large ribosomal subunit protein eL18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- eL42
Coloring options: