J3_9Q1S_025
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1S_025 not in the Motif Atlas
- Geometric match to J3_8GLP_040
- Geometric discrepancy: 0.1371
- The information below is about J3_8GLP_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9Q1S|1|9|A|40
9Q1S|1|9|G|41
*
9Q1S|1|9|C|481
9Q1S|1|9|G|482
9Q1S|1|9|C|483
9Q1S|1|9|A|484
9Q1S|1|9|A|485
9Q1S|1|9|A|486
9Q1S|1|9|U|487
*
9Q1S|1|9|A|512
9Q1S|1|9|G|513
9Q1S|1|9|U|514
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain JJ
- Small ribosomal subunit protein uS4
- Chain XX
- 40S ribosomal protein S23
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