J3_9Q2M_028
3D structure
- PDB id
- 9Q2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q2M_028 not in the Motif Atlas
- Homologous match to J3_9H3G_032
- Geometric discrepancy: 0.169
- The information below is about J3_9H3G_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.5
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9Q2M|1|9|A|669
9Q2M|1|9|G|670
9Q2M|1|9|A|671
9Q2M|1|9|G|672
*
9Q2M|1|9|C|682
9Q2M|1|9|A|683
9Q2M|1|9|G|684
*
9Q2M|1|9|C|690
9Q2M|1|9|U|691
9Q2M|1|9|G|692
9Q2M|1|9|G|693
9Q2M|1|9|A|694
9Q2M|1|9|U|695
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain JJ
- 40S ribosomal protein S9
- Chain YY
- 40S ribosomal protein S24
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