J3_9Q2M_034

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9Q2M|1|9|G|1290, 9Q2M|1|9|G|1513, 9Q2M|1|9|U|1515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2M|1|9|C|1288
9Q2M|1|9|C|1289
9Q2M|1|9|G|1290
9Q2M|1|9|G|1291
9Q2M|1|9|A|1292
9Q2M|1|9|C|1293
*
9Q2M|1|9|G|1336
9Q2M|1|9|G|1337
9Q2M|1|9|G|1338
9Q2M|1|9|U|1339
9Q2M|1|9|G|1340
*
9Q2M|1|9|U|1510
9Q2M|1|9|U|1511
9Q2M|1|9|A|1512
9Q2M|1|9|G|1513
9Q2M|1|9|A|1514
9Q2M|1|9|U|1515
9Q2M|1|9|G|1516

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EF

Elongation factor 2

Chain KK

40S ribosomal protein S10

Chain dd

40S ribosomal protein S29

Chain ff

40S ribosomal protein S27a