J3_9Q2O_004
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CAGUC*GUGCG*CGACG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2O|1|5|C|451
9Q2O|1|5|A|452
9Q2O|1|5|G|453
9Q2O|1|5|U|454
9Q2O|1|5|C|455
*
9Q2O|1|5|G|701
9Q2O|1|5|U|702
9Q2O|1|5|G|703
9Q2O|1|5|C|704
9Q2O|1|5|G|705
*
9Q2O|1|5|C|1292
9Q2O|1|5|G|1293
9Q2O|1|5|A|1294
9Q2O|1|5|C|1295
9Q2O|1|5|G|1296
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain e
- Large ribosomal subunit protein eL32
- Chain f
- Large ribosomal subunit protein eL33
- Chain r
- 60S ribosomal protein L28
Coloring options: