J3_9Q2O_019
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGGUUG*CCUUC*GCACCGCACGUUCGUG
- Length
- 27 nucleotides
- Bulged bases
- 9Q2O|1|5|U|4882, 9Q2O|1|5|A|4938, 9Q2O|1|5|C|4940, 9Q2O|1|5|A|4943, 9Q2O|1|5|C|4944, 9Q2O|1|5|U|4950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2O|1|5|C|4749
9Q2O|1|5|G|4750
9Q2O|1|5|G|4751
9Q2O|1|5|U|4752
9Q2O|1|5|U|4753
9Q2O|1|5|G|4754
*
9Q2O|1|5|C|4879
9Q2O|1|5|C|4880
9Q2O|1|5|U|4881
9Q2O|1|5|U|4882
9Q2O|1|5|C|4883
*
9Q2O|1|5|G|4936
9Q2O|1|5|C|4937
9Q2O|1|5|A|4938
9Q2O|1|5|C|4939
9Q2O|1|5|C|4940
9Q2O|1|5|G|4941
9Q2O|1|5|C|4942
9Q2O|1|5|A|4943
9Q2O|1|5|C|4944
9Q2O|1|5|G|4945
9Q2O|1|5|U|4946
9Q2O|1|5|U|4947
9Q2O|1|5|C|4948
9Q2O|1|5|G|4949
9Q2O|1|5|U|4950
9Q2O|1|5|G|4951
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain M
- 60S ribosomal protein L14
- Chain O
- Large ribosomal subunit protein uL13
- Chain f
- Large ribosomal subunit protein eL33
Coloring options: