J3_9Q2O_029

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

ACCACCAG*CCAGUAA*UGAUUAAGUCCCU

Length

28 nucleotides

Bulged bases

9Q2O|1|9|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|9|A|1214
9Q2O|1|9|C|1215
9Q2O|1|9|C|1216
9Q2O|1|9|A|1217
9Q2O|1|9|C|1218
9Q2O|1|9|C|1219
9Q2O|1|9|A|1220
9Q2O|1|9|G|1221
*
9Q2O|1|9|C|1645
9Q2O|1|9|C|1646
9Q2O|1|9|A|1647
9Q2O|1|9|G|1648
9Q2O|1|9|U|1649
9Q2O|1|9|A|1650
9Q2O|1|9|A|1651
*
9Q2O|1|9|U|1673
9Q2O|1|9|G|1674
9Q2O|1|9|A|1675
9Q2O|1|9|U|1676
9Q2O|1|9|U|1677
9Q2O|1|9|A|1678
9Q2O|1|9|A|1679
9Q2O|1|9|G|1680
9Q2O|1|9|U|1681
9Q2O|1|9|C|1682
9Q2O|1|9|C|1683
9Q2O|1|9|C|1684
9Q2O|1|9|U|1685

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 1

NediV IRES

Chain FF

Small ribosomal subunit protein uS7

Chain QQ

Small ribosomal subunit protein uS9

Chain aa

eS26

Chain cc

40S ribosomal protein S28