J3_9Q2O_031
3D structure
- PDB id
- 9Q2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9Q2O|1|9|G|1256, 9Q2O|1|9|A|1258, 9Q2O|1|9|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q2O|1|9|C|1237
9Q2O|1|9|U|1238
9Q2O|1|9|U|1239
9Q2O|1|9|A|1240
9Q2O|1|9|A|1241
9Q2O|1|9|U|1242
9Q2O|1|9|U|1243
9Q2O|1|9|U|1244
*
9Q2O|1|9|G|1255
9Q2O|1|9|G|1256
9Q2O|1|9|G|1257
9Q2O|1|9|A|1258
9Q2O|1|9|A|1259
9Q2O|1|9|A|1260
9Q2O|1|9|C|1261
9Q2O|1|9|C|1262
9Q2O|1|9|U|1263
9Q2O|1|9|C|1264
9Q2O|1|9|A|1265
9Q2O|1|9|C|1266
*
9Q2O|1|9|G|1516
9Q2O|1|9|G|1517
9Q2O|1|9|C|1518
9Q2O|1|9|U|1519
9Q2O|1|9|G|1520
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain AT
- Transfer RNA; tRNA
- Chain PP
- Small ribosomal subunit protein uS19
- Chain SS
- 40S ribosomal protein S18
- Chain UU
- 40S ribosomal protein S20
- Chain dd
- 40S ribosomal protein S29
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