J3_9Q2O_036

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9Q2O|1|9|U|1535, 9Q2O|1|9|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|9|C|1532
9Q2O|1|9|A|1533
9Q2O|1|9|C|1534
9Q2O|1|9|U|1535
9Q2O|1|9|G|1536
*
9Q2O|1|9|C|1597
9Q2O|1|9|G|1598
9Q2O|1|9|U|1599
9Q2O|1|9|G|1600
9Q2O|1|9|A|1601
9Q2O|1|9|U|1602
9Q2O|1|9|G|1603
9Q2O|1|9|G|1604
*
9Q2O|1|9|C|1635
9Q2O|1|9|G|1636
9Q2O|1|9|A|1637
9Q2O|1|9|G|1638

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

Small ribosomal subunit protein uS7

Chain SS

40S ribosomal protein S18

Chain TT

Small ribosomal subunit protein eS19

Chain ZZ

40S ribosomal protein S25