J3_9Q2P_006

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

9Q2P|1|5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2P|1|5|C|451
9Q2P|1|5|A|452
9Q2P|1|5|G|453
9Q2P|1|5|U|454
9Q2P|1|5|C|455
*
9Q2P|1|5|G|701
9Q2P|1|5|U|702
9Q2P|1|5|G|703
9Q2P|1|5|C|704
9Q2P|1|5|G|705
*
9Q2P|1|5|C|1292
9Q2P|1|5|G|1293
9Q2P|1|5|A|1294
9Q2P|1|5|C|1295
9Q2P|1|5|G|1296

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

Large ribosomal subunit protein eL32

Chain f

Large ribosomal subunit protein eL33

Chain r

60S ribosomal protein L28