J3_9Q2P_008

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9Q2P|1|5|A|1534, 9Q2P|1|5|G|1641, 9Q2P|1|5|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2P|1|5|U|1531
9Q2P|1|5|G|1532
9Q2P|1|5|A|1533
9Q2P|1|5|A|1534
9Q2P|1|5|C|1535
9Q2P|1|5|U|1536
9Q2P|1|5|A|1537
*
9Q2P|1|5|U|1622
9Q2P|1|5|A|1623
9Q2P|1|5|G|1624
*
9Q2P|1|5|C|1640
9Q2P|1|5|G|1641
9Q2P|1|5|A|1642
9Q2P|1|5|A|1643

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain N

60S ribosomal protein L15

Chain j

60S ribosomal protein L37

Chain l

60S ribosomal protein L39