J3_9Q2P_025
3D structure
- PDB id
- 9Q2P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 9Q2P|1|8|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q2P_025 not in the Motif Atlas
- Homologous match to J3_8GLP_039
- Geometric discrepancy: 0.0807
- The information below is about J3_8GLP_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.3
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9Q2P|1|8|A|44
9Q2P|1|8|C|45
*
9Q2P|1|8|G|58
9Q2P|1|8|A|59
9Q2P|1|8|G|60
9Q2P|1|8|A|61
9Q2P|1|8|A|62
9Q2P|1|8|U|63
9Q2P|1|8|U|64
*
9Q2P|1|8|A|95
9Q2P|1|8|C|96
9Q2P|1|8|A|97
9Q2P|1|8|C|98
9Q2P|1|8|U|99
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- Large ribosomal subunit protein uL23
- Chain h
- 60S ribosomal protein L35
- Chain j
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
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