J3_9Q2P_037

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9Q2P|1|9|G|1274, 9Q2P|1|9|G|1507, 9Q2P|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2P|1|9|C|1272
9Q2P|1|9|C|1273
9Q2P|1|9|G|1274
9Q2P|1|9|G|1275
9Q2P|1|9|A|1276
9Q2P|1|9|C|1277
*
9Q2P|1|9|G|1320
9Q2P|1|9|G|1321
9Q2P|1|9|G|1322
9Q2P|1|9|U|1323
9Q2P|1|9|G|1324
*
9Q2P|1|9|U|1504
9Q2P|1|9|U|1505
9Q2P|1|9|A|1506
9Q2P|1|9|G|1507
9Q2P|1|9|A|1508
9Q2P|1|9|U|1509
9Q2P|1|9|G|1510

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

40S ribosomal protein S10

Chain dd

40S ribosomal protein S29

Chain ff

40S ribosomal protein S27a