J3_9Q2T_008

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCAG*CGUAG*UCCGAC

Length

15 nucleotides

Bulged bases

9Q2T|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|5|G|1545
9Q2T|1|5|C|1546
9Q2T|1|5|A|1547
9Q2T|1|5|G|1548
*
9Q2T|1|5|C|1580
9Q2T|1|5|G|1581
9Q2T|1|5|U|1582
9Q2T|1|5|A|1583
9Q2T|1|5|G|1584
*
9Q2T|1|5|U|1609
9Q2T|1|5|C|1610
9Q2T|1|5|C|1611
9Q2T|1|5|G|1612
9Q2T|1|5|A|1613
9Q2T|1|5|C|1614

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain R

60S ribosomal protein L19

Chain g

60S ribosomal protein L34

Chain p

60S ribosomal protein L37a