J3_9Q2T_010

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GACG*CGCUAAGG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2T|1|5|G|1969
9Q2T|1|5|A|1970
9Q2T|1|5|C|1971
9Q2T|1|5|G|1972
*
9Q2T|1|5|C|1994
9Q2T|1|5|G|1995
9Q2T|1|5|C|1996
9Q2T|1|5|U|1997
9Q2T|1|5|A|1998
9Q2T|1|5|A|1999
9Q2T|1|5|G|2000
9Q2T|1|5|G|2001
*
9Q2T|1|5|C|2016
9Q2T|1|5|A|2017
9Q2T|1|5|C|2018

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

uL11