J3_9Q2T_021
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9Q2T|1|5|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q2T_021 not in the Motif Atlas
- Homologous match to J3_8GLP_034
- Geometric discrepancy: 0.112
- The information below is about J3_8GLP_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.4
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9Q2T|1|5|G|4228
9Q2T|1|5|U|4229
9Q2T|1|5|C|4230
*
9Q2T|1|5|G|4331
9Q2T|1|5|C|4332
9Q2T|1|5|C|4333
9Q2T|1|5|U|4334
9Q2T|1|5|C|4335
9Q2T|1|5|A|4336
9Q2T|1|5|C|4337
9Q2T|1|5|G|4338
9Q2T|1|5|A|4339
9Q2T|1|5|U|4340
9Q2T|1|5|C|4341
9Q2T|1|5|C|4342
*
9Q2T|1|5|G|4370
9Q2T|1|5|G|4371
9Q2T|1|5|U|4372
9Q2T|1|5|G|4373
9Q2T|1|5|U|4374
9Q2T|1|5|C|4375
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Q
- Large ribosomal subunit protein eL18
- Chain T
- 60S ribosomal protein L21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- eL42
Coloring options: