J3_9Q3Q_004
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9Q3Q|1|A|U|72, 9Q3Q|1|A|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3Q_004 not in the Motif Atlas
- Homologous match to J3_8B0X_015
- Geometric discrepancy: 0.0498
- The information below is about J3_8B0X_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.3
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9Q3Q|1|A|A|56
9Q3Q|1|A|C|57
*
9Q3Q|1|A|G|70
9Q3Q|1|A|A|71
9Q3Q|1|A|U|72
9Q3Q|1|A|A|73
9Q3Q|1|A|A|74
9Q3Q|1|A|G|75
9Q3Q|1|A|C|76
*
9Q3Q|1|A|G|110
9Q3Q|1|A|A|111
9Q3Q|1|A|U|112
9Q3Q|1|A|U|113
9Q3Q|1|A|U|114
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein uL29
- Chain 6
- Large ribosomal subunit protein bL34
- Chain V
- 50S ribosomal protein L23
Coloring options: