J3_9Q3Q_014
3D structure
- PDB id
- 9Q3Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of translating Escherichia coli 70S ribosome bound to mRNA, P-site QKF-peptidyl-tRNAPhe, glycyl-tRNAGly in A/T conformation, EF-Tu-GDP, and bottromycin at 2.01A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.01 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9Q3Q|1|A|A|2388, 9Q3Q|1|A|U|2390, 9Q3Q|1|A|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q3Q_014 not in the Motif Atlas
- Homologous match to J3_8B0X_036
- Geometric discrepancy: 0.0421
- The information below is about J3_8B0X_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9Q3Q|1|A|G|2282
9Q3Q|1|A|C|2283
9Q3Q|1|A|A|2284
*
9Q3Q|1|A|U|2384
9Q3Q|1|A|C|2385
9Q3Q|1|A|A|2386
9Q3Q|1|A|U|2387
9Q3Q|1|A|A|2388
9Q3Q|1|A|G|2389
9Q3Q|1|A|U|2390
9Q3Q|1|A|G|2391
9Q3Q|1|A|A|2392
9Q3Q|1|A|U|2393
9Q3Q|1|A|C|2394
9Q3Q|1|A|C|2395
*
9Q3Q|1|A|G|2421
9Q3Q|1|A|C|2422
9Q3Q|1|A|U|2423
9Q3Q|1|A|C|2424
9Q3Q|1|A|A|2425
9Q3Q|1|A|A|2426
9Q3Q|1|A|C|2427
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain N
- 50S ribosomal protein L15
- Chain Y
- 50S ribosomal protein L27
Coloring options: