J3_9Q6Q_002
3D structure
- PDB id
- 9Q6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-18 triazole derivative and protein Y at 2.90A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 9Q6Q|1|1A|U|504, 9Q6Q|1|1A|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q6Q_002 not in the Motif Atlas
- Homologous match to J3_8B0X_032
- Geometric discrepancy: 0.0826
- The information below is about J3_8B0X_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.4
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9Q6Q|1|1A|G|30
9Q6Q|1|1A|C|31
*
9Q6Q|1|1A|G|474
9Q6Q|1|1A|U|475
9Q6Q|1|1A|G|476
9Q6Q|1|1A|A|477
9Q6Q|1|1A|A|478
9Q6Q|1|1A|A|479
9Q6Q|1|1A|A|480
9Q6Q|1|1A|G|481
9Q6Q|1|1A|A|482
9Q6Q|1|1A|A|483
9Q6Q|1|1A|C|484
*
9Q6Q|1|1A|G|496
9Q6Q|1|1A|A|497
9Q6Q|1|1A|G|498
9Q6Q|1|1A|U|499
9Q6Q|1|1A|G|500
9Q6Q|1|1A|A|501
9Q6Q|1|1A|A|502
9Q6Q|1|1A|A|503
9Q6Q|1|1A|U|504
9Q6Q|1|1A|A|505
9Q6Q|1|1A|G|506
9Q6Q|1|1A|A|507
9Q6Q|1|1A|G|508
9Q6Q|1|1A|C|509
9Q6Q|1|1A|C|510
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
- Chain 1Y
- 50S ribosomal protein L24
Coloring options: