J3_9Q6R_007

3D structure

PDB id

9Q6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-27 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

9Q6R|1|1A|G|686, 9Q6R|1|1A|G|792, 9Q6R|1|1A|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6R_007 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1458

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

12

Unit IDs

9Q6R|1|1A|C|683
9Q6R|1|1A|G|684
9Q6R|1|1A|A|685
9Q6R|1|1A|G|686
9Q6R|1|1A|C|687
9Q6R|1|1A|U|688
9Q6R|1|1A|A|689
*
9Q6R|1|1A|U|773
9Q6R|1|1A|A|774
9Q6R|1|1A|G|775
*
9Q6R|1|1A|C|791
9Q6R|1|1A|G|792
9Q6R|1|1A|A|793
9Q6R|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2