J3_9Q6S_037

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

9Q6S|1|2A|U|504, 9Q6S|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6S_037 not in the Motif Atlas

Homologous match to J3_8B0X_032

Geometric discrepancy: 0.0836

The information below is about J3_8B0X_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.4

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

11

Unit IDs

9Q6S|1|2A|G|30
9Q6S|1|2A|C|31
*
9Q6S|1|2A|G|474
9Q6S|1|2A|U|475
9Q6S|1|2A|G|476
9Q6S|1|2A|A|477
9Q6S|1|2A|A|478
9Q6S|1|2A|A|479
9Q6S|1|2A|A|480
9Q6S|1|2A|G|481
9Q6S|1|2A|A|482
9Q6S|1|2A|A|483
9Q6S|1|2A|C|484
*
9Q6S|1|2A|G|496
9Q6S|1|2A|A|497
9Q6S|1|2A|G|498
9Q6S|1|2A|U|499
9Q6S|1|2A|G|500
9Q6S|1|2A|A|501
9Q6S|1|2A|A|502
9Q6S|1|2A|A|503
9Q6S|1|2A|U|504
9Q6S|1|2A|A|505
9Q6S|1|2A|G|506
9Q6S|1|2A|A|507
9Q6S|1|2A|G|508
9Q6S|1|2A|C|509
9Q6S|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24