J3_9Q6S_043

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6S_043 not in the Motif Atlas

Homologous match to J3_8B0X_017

Geometric discrepancy: 0.0615

The information below is about J3_8B0X_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.4

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

12

Unit IDs

9Q6S|1|2A|C|698
9Q6S|1|2A|A|699
9Q6S|1|2A|G|700
*
9Q6S|1|2A|C|732
9Q6S|1|2A|G|733
9Q6S|1|2A|A|734
9Q6S|1|2A|A|735
9Q6S|1|2A|C|736
*
9Q6S|1|2A|G|760
9Q6S|1|2A|A|761
9Q6S|1|2A|U|762
9Q6S|1|2A|G|763

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2