J3_9Q6S_063

3D structure

PDB id

9Q6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with pleuromutilin-30 triazole derivative and protein Y at 2.90A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

9Q6S|1|2a|A|975, 9Q6S|1|2a|G|976, 9Q6S|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6S_063 not in the Motif Atlas

Homologous match to J3_8B0X_007

Geometric discrepancy: 0.103

The information below is about J3_8B0X_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9Q6S|1|2a|U|955
9Q6S|1|2a|U|956
9Q6S|1|2a|U|957
9Q6S|1|2a|A|958
9Q6S|1|2a|A|959
9Q6S|1|2a|U|960
9Q6S|1|2a|U|961
9Q6S|1|2a|C|962
*
9Q6S|1|2a|G|973
9Q6S|1|2a|A|974
9Q6S|1|2a|A|975
9Q6S|1|2a|G|976
9Q6S|1|2a|A|977
9Q6S|1|2a|A|978
9Q6S|1|2a|C|979
9Q6S|1|2a|C|980
9Q6S|1|2a|U|981
9Q6S|1|2a|U|982
9Q6S|1|2a|A|983
9Q6S|1|2a|C|984
*
9Q6S|1|2a|G|1221
9Q6S|1|2a|G|1222
9Q6S|1|2a|C|1223
9Q6S|1|2a|G|1224
9Q6S|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2y

Ribosome-associated inhibitor A