J3_9Q6T_040

3D structure

PDB id

9Q6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin and protein Y at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

9Q6T|1|2A|U|72, 9Q6T|1|2A|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6T_040 not in the Motif Atlas

Homologous match to J3_8B0X_015

Geometric discrepancy: 0.0962

The information below is about J3_8B0X_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01004.4

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

12

Unit IDs

9Q6T|1|2A|A|56
9Q6T|1|2A|C|57
*
9Q6T|1|2A|G|70
9Q6T|1|2A|A|71
9Q6T|1|2A|U|72
9Q6T|1|2A|A|73
9Q6T|1|2A|A|74
9Q6T|1|2A|G|75
9Q6T|1|2A|C|76
*
9Q6T|1|2A|G|110
9Q6T|1|2A|A|111
9Q6T|1|2A|U|112
9Q6T|1|2A|G|113
9Q6T|1|2A|U|114

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L29

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23