J3_9Q6U_038

3D structure

PDB id

9Q6U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-26 triazole derivative and protein Y at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

9Q6U|1|2A|U|504, 9Q6U|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6U_038 not in the Motif Atlas

Homologous match to J3_8B0X_032

Geometric discrepancy: 0.0888

The information below is about J3_8B0X_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.4

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

11

Unit IDs

9Q6U|1|2A|G|30
9Q6U|1|2A|C|31
*
9Q6U|1|2A|G|474
9Q6U|1|2A|U|475
9Q6U|1|2A|G|476
9Q6U|1|2A|A|477
9Q6U|1|2A|A|478
9Q6U|1|2A|A|479
9Q6U|1|2A|A|480
9Q6U|1|2A|G|481
9Q6U|1|2A|A|482
9Q6U|1|2A|A|483
9Q6U|1|2A|C|484
*
9Q6U|1|2A|G|496
9Q6U|1|2A|A|497
9Q6U|1|2A|G|498
9Q6U|1|2A|U|499
9Q6U|1|2A|G|500
9Q6U|1|2A|A|501
9Q6U|1|2A|A|502
9Q6U|1|2A|A|503
9Q6U|1|2A|U|504
9Q6U|1|2A|A|505
9Q6U|1|2A|G|506
9Q6U|1|2A|A|507
9Q6U|1|2A|G|508
9Q6U|1|2A|C|509
9Q6U|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24