J3_9Q6U_056
3D structure
- PDB id
- 9Q6U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-26 triazole derivative and protein Y at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GC*GGAAUCU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q6U_056 not in the Motif Atlas
- Geometric match to J3_4LFB_010
- Geometric discrepancy: 0.0756
- The information below is about J3_4LFB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9Q6U|1|2a|G|46
9Q6U|1|2a|C|47
*
9Q6U|1|2a|G|361
9Q6U|1|2a|G|362
9Q6U|1|2a|A|363
9Q6U|1|2a|A|364
9Q6U|1|2a|U|365
9Q6U|1|2a|C|366
9Q6U|1|2a|U|367
*
9Q6U|1|2a|A|393
9Q6U|1|2a|G|394
9Q6U|1|2a|C|395
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2l
- 30S ribosomal protein S12
- Chain 2p
- 30S ribosomal protein S16
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