J3_9Q6V_039

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

9Q6V|1|2A|U|448, 9Q6V|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6V_039 not in the Motif Atlas

Homologous match to J3_8B0X_033

Geometric discrepancy: 0.1787

The information below is about J3_8B0X_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.4

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

12

Unit IDs

9Q6V|1|2A|C|32
9Q6V|1|2A|U|33
9Q6V|1|2A|C|34
9Q6V|1|2A|G|35
*
9Q6V|1|2A|C|445
9Q6V|1|2A|G|446
9Q6V|1|2A|A|447
9Q6V|1|2A|U|448
9Q6V|1|2A|A|449
9Q6V|1|2A|G|450
9Q6V|1|2A|C|451
9Q6V|1|2A|G|452
9Q6V|1|2A|C|453
9Q6V|1|2A|A|454
9Q6V|1|2A|C|455
9Q6V|1|2A|C|456
9Q6V|1|2A|A|457
9Q6V|1|2A|G|458
9Q6V|1|2A|U|459
9Q6V|1|2A|A|460
9Q6V|1|2A|C|461
*
9Q6V|1|2A|G|468
9Q6V|1|2A|G|469
9Q6V|1|2A|A|470
9Q6V|1|2A|A|471
9Q6V|1|2A|A|472
9Q6V|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23