J3_9Q6V_051

3D structure

PDB id

9Q6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tiamulin-31 triazole derivative and protein Y at 2.85A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

9Q6V|1|2A|A|2388, 9Q6V|1|2A|U|2390, 9Q6V|1|2A|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Q6V_051 not in the Motif Atlas

Homologous match to J3_8B0X_036

Geometric discrepancy: 0.1214

The information below is about J3_8B0X_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.4

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9Q6V|1|2A|G|2282
9Q6V|1|2A|C|2283
9Q6V|1|2A|C|2284
*
9Q6V|1|2A|G|2384
9Q6V|1|2A|C|2385
9Q6V|1|2A|C|2386
9Q6V|1|2A|U|2387
9Q6V|1|2A|A|2388
9Q6V|1|2A|G|2389
9Q6V|1|2A|U|2390
9Q6V|1|2A|G|2391
9Q6V|1|2A|A|2392
9Q6V|1|2A|A|2393
9Q6V|1|2A|C|2394
9Q6V|1|2A|C|2395
*
9Q6V|1|2A|G|2421
9Q6V|1|2A|A|2422
9Q6V|1|2A|U|2423
9Q6V|1|2A|C|2424
9Q6V|1|2A|A|2425
9Q6V|1|2A|A|2426
9Q6V|1|2A|C|2427

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 21

50S ribosomal protein L28

Chain 26

50S ribosomal protein L33

Chain 28

50S ribosomal protein L35

Chain 2P

50S ribosomal protein L15

Chain 2Z

50S ribosomal protein L25